Difference: OSBiology (1 vs. 2)

• autodock Available versions: ~4.0.1 ~4.0.1-r1 Homepage: http://autodock.scripps.edu/ Description: A suite of automated docking tools

• ccp4 Available versions: *6.0.1-r1!m ~*6.0.2!m ~6.0.2-r1!m {X debug} Homepage: http://www.ccp4.ac.uk/ Description: Protein X-ray crystallography toolkit

• pdb-extract Available versions: ~1.700 Homepage: http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html Description: Tools for extracting mmCIF data from structure determination applications

• reduce Available versions: *2.21.030604 ~*3.02.060709 3.13.080428 Homepage: http://kinemage.biochem.duke.edu/software/reduce.php Description: Adds hydrogens to a Protein Data Bank (PDB) molecule structure file

Computational Biology and bio-informatics

• EMBOSS - The European Molecular Biology Open Software Suite
• GROMACS - Molecular dynamics simulator, with building and analysis tools
• VMD - Displays, animates, and analyzes large bio-molecular systems

-- RobAllan - 08 Dec 2009