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GNU Build System (Autotools) RobAllan 04 Mar 2010 For an overview, see the Wikipedia article: http://en.wikipedia.org/wiki/GNU build system A typical bootstrap ...
Cockcroft Institute Condor Pool This static information was updated 3/3/2009. The pool is currently maintained by Jonny Smith. We would like to invite you to join ...
Daresbury Laboratory Condor Pool This static information was last updated 3/3/2009. This pool is currently maintained by Rob Allan and Dave Cable. /opt/condor/bin ...
HPC Centres and Strategies for Advancing Computational Science in Academic Institutions RobAllan 19 Apr 2010 over Europe here is the current view. Please ...
Network Traffic and Firewall Issues in Grids RobAllan 02 Mar 2010 Note, many below are well known IANA service ports. PKI, TLS and Digital Certificates Introduction ...
What is the G R Toolkit? The G R Toolkit combines the best software developed at SFTC during its e Science Programme from 2001 2007. Much of this was developed in ...
Gentoo Linux Hints and Tips I have worked with Gentoo Linux now for a few years, see: http://www.gentoo.org/doc/en/handbook/index.xml Whilst I am not exactly a "newbie ...
HPC SIG Visualisation Focus Group A visualisation focus group has been formed within the UK HPC Special Interest Group. If you are interested in this please contact ...
LaTeX Stuff RobAllan 24 Feb 2010 Just a few reminders for myself. Adding a class or sty file Put it in the appropriate directory. Then run texhash .
A CCP for Agent Based Modelling and Simulation RobAllan 1 July 2010 A separate Wiki will be used for further discussion, see http://www.softeng.rl.ac.uk/wiki/abm ...
MPICH 2 1.2.1 RobAllan 11 Feb 2010 As root (or installer), download source from http://www.mcs.anl.gov/research/projects/mpich2/ ignore the older Web pages ...
Environment Modules RobAllan 11 Feb 2010 Modules on dl1 are in /usr/share/Modules/modulefiles etc. Follow the format of existing ones, and refer to the documentation ...
Algebra Packages Commercial/ Proprietary MatLab from MathWorks Mathematica from Wolfram Research Free/ Open Source I think I was supposed to provide ...
Computational Biology and bio informatics autodock Available versions: ~4.0.1 ~4.0.1 r1 Homepage: http://autodock.scripps.edu/ Description ...
Computational Chemistry Commercial/ Proprietary Packages Gaussian 09 vA02 Free or Open Source GAMESS UK General ab initio quantum chemistry package ...
Computational Statistics pspp Available versions: ~0.6.1 {doc emacs gtk ncurses nls plotutils postgres} Homepage: http://www.gnu.org/software ...
Computational Engineering Computational Fluid Dynamics Proprietary Fluent Star CD Free/ Open Source OpenFOAM Facilitates the numerical solution ...
Geographical Information Systems and Geo sciences GRASS Geographic Resources Analysis Support System Quantum GIS Create, visualise, query and analyse ...
Molecular Dynamics Commercial/ Proprietary Packages Free or Open Source DL POLY 2 v2.20 DL POLY 3 v3.10 gromacs Available ...
Physics and Astronomy General Physics abinit Available versions: ~ 5.3.4 ~5.4.4 {debug mpi test} Homepage: http://www.abinit ...
Graph Plotting, etc. epix Available versions: 1.2.1 1.2.5 ~1.2.6 {bash completion doc emacs examples} Homepage: ...
Scientific Visualisation Commercial/ Proprietary Amira http://www.amiravis.com/ Free/ Open Source extrema Available versions ...
Open Source/ Free Software Alternatives RobAllan 20 Apr 2010 http://www.2020flossroadmap.org/ FLOSS Roadmap 2020 http://www.ibm.com/developerworks/opensource ...
Building and using OpenMPI 1.4.1 RobAllan 20 Apr 2010 Current version is OpenMPI 1.4.1. See here http://icl.cs.utk.edu/open mpi/software/ompi/v1.4/ to download ...
Sun Grid Engine 6.2 RobAllan 11 Feb 2010 The master message log on dl1 is at /usr/local/sge6.2/default/spool/qmaster/messages If you are getting a job in an ...
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